Stem-loop sequence rno-mir-149

AccessionMI0030351 (change log)
DescriptionRattus norvegicus miR-149 stem-loop
Gene family MIPF0000274; mir-149
Literature search

5 open access papers mention rno-mir-149
(12 sentences)

Stem-loop 
   g     -    g   u   g      g     a     g g   g 
5'  ccggu gccc ggc cug cuccgu ucuuc cuccc u uuu u
    ||||| |||| ||| ||| |||||| ||||| ||||| | |||  
3'  gguca cggg ucg ggc ggggca ggagg gaggg a gag c
   a     a    g   u   g      g     -     - g   c
Get sequence
Deep sequencing
291647 reads, 359 reads per million, 477 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr9: 100016441-100016529 [+]
sense
ENSRNOT00000074395 ; Gpc1-201; intron 1
Database links

Mature sequence rno-miR-149-5p

Accession MIMAT0035726
Sequence

15 -  

ucuggcuccgugucuucacuccc

 - 37

Get sequence
Deep sequencing291235 reads, 475 experiments
Evidence experimental; RNAseq-metaanalysis [1]
Predicted targets

Mature sequence rno-miR-149-3p

Accession MIMAT0035727
Sequence

61 -  

gggacgggggcggugcug

 - 78

Get sequence
Deep sequencing160 reads, 76 experiments
Evidence experimental; RNAseq-metaanalysis [1]
Predicted targets

References

1
PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).