miRBase entry: pbv-mir-2188

Stem-loop pbv-mir-2188


Accession
MI0030335
Description
Python bivittatus pbv-mir-2188 precursor miRNA


Sequence

ucacacuuguggucAAGGUCCAACCUCAUGUGUCCUguaugcaaugaaaguggGAUGCAUGUGGUCAGACCUAGAccacaaggccagugg
.(((.(((((((((.(((((..(((.((((((((((...............)))))))))).)))..))))).)))))))))....))).

Structure
u   ---a         A     CA   U          guaugc 
 cac    cuugugguc AGGUC  ACC CAUGUGUCCU      a
 |||    ||||||||| |||||  ||| ||||||||||      a
 gug    gaacaccAG UCCAG  UGG GUACGUAGgg      u
g   accg         A     AC   U          ugaaag 


Annotation confidence Not enough data
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Genome context
KE955095.1: 150217-150306 [-]

Database links

Mature pbv-miR-2188-5p

Accession MIMAT0039089
Description Python bivittatus pbv-miR-2188-5p mature miRNA
Sequence 15 - AAGGUCCAACCUCAUGUGUCCU - 36
Evidence experimental
Illumina [1]

Mature pbv-miR-2188-3p

Accession MIMAT0039090
Description Python bivittatus pbv-miR-2188-3p mature miRNA
Sequence 54 - GAUGCAUGUGGUCAGACCUAGA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196