miRBase entry: pbv-mir-1677

Stem-loop pbv-mir-1677


Accession
MI0030332
Description
Python bivittatus pbv-mir-1677 precursor miRNA


Sequence

gcugagguccugaACCAAAGCCCCUCGAGGACAAUgugcgucuuucuauUGACUUCAGUGGGCUUAGGAUCaggcccuuaaugcauag
(((((((.(((((.((.((((((((.((((.(((((..........))))).)))))).)))))).)).))))).)))))..))....

Structure
----  --     u     A  A      -  C    A     ugcg 
    gc  ugagg ccuga CC AAGCCC CU GAGG CAAUg    u
    ||  ||||| ||||| || |||||| || |||| |||||     
    cg  auucc ggaCU GG UUCGGG GA CUUC GUuau    c
gaua  ua     c     A  A      U  -    A     cuuu 


Annotation confidence Not enough data
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Genome context
KE956408.1: 78917-79004 [-]

Database links

Mature pbv-miR-1677-5p

Accession MIMAT0039083
Description Python bivittatus pbv-miR-1677-5p mature miRNA
Sequence 14 - ACCAAAGCCCCUCGAGGACAAU - 35
Evidence experimental
Illumina [1]

Mature pbv-miR-1677-3p

Accession MIMAT0039084
Description Python bivittatus pbv-miR-1677-3p mature miRNA
Sequence 50 - UGACUUCAGUGGGCUUAGGAUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196