miRBase entry: pbv-mir-425

Stem-loop pbv-mir-425


Accession
MI0030308
Description
Python bivittatus pbv-mir-425 precursor miRNA


Sequence

ggaagagaaauugccgaggAAUGACACGAUCACUCCCGCUGAGcgaguggacgcagagcCACGGGGCUGUCGUGUCUGUCCugagcuuuuucc
......((((..((..((((..((((((((..((((.(((..(((......)))..)))...))))..))))))))..))))..))..)))).

Structure
ggaaga    uu  cg    AU        CA    --C   GA   ag 
      gaaa  gc  aggA  GACACGAU  CUCC   GCU  Gcg  u
      ||||  ||  ||||  ||||||||  ||||   |||  |||   
      cuuu  cg  uCCU  CUGUGCUG  GGGG   cga  cgc  g
-----c    uu  ag    GU        UC    CAC   ga   ag 


Annotation confidence Not enough data
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Genome context
KE954653.1: 223809-223901 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pbv-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-425-5p

Accession MIMAT0039048
Description Python bivittatus pbv-miR-425-5p mature miRNA
Sequence 20 - AAUGACACGAUCACUCCCGCUGAG - 43
Evidence experimental
Illumina [1]

Mature pbv-miR-425-3p

Accession MIMAT0039049
Description Python bivittatus pbv-miR-425-3p mature miRNA
Sequence 60 - CACGGGGCUGUCGUGUCUGUCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196