Stem-loop pbv-mir-301a

Accession

MI0030300

Description

Python bivittatus pbv-mir-301a precursor miRNA

Sequence

uuuugcugcugacaaguGCUCUGACUUCAUUGCACUACuguacuucccagcuagCAGUGCAAUAGUAUUGUCAAAGCacuugcgagcagaa
.....(((((..((((((((.((((..(((((((((.((((........)).)).)))))))).)....)))).))))))))..)))))..

Structure

uuuug     ga        C    --UU -        A  -  acu 
     cugcu  caaguGCU UGAC    C AUUGCACU Cu gu   u
     |||||  |||||||| ||||    | |||||||| || ||    
     gacga  guucaCGA ACUG    G UAACGUGA ga cg   c
---aa     gc        A    UUAU A        C  u  acc 

Annotation confidence Not enough data

Genome context

KE959299.1: 49087-49177 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-301a

Mature pbv-miR-301a-5p

• Accession: MIMAT0039038
• Description: Python bivittatus pbv-miR-301a-5p mature miRNA
• Sequence: 18 - GCUCUGACUUCAUUGCACUAC - 38
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-301a-3p

• Accession: MIMAT0039039
• Description: Python bivittatus pbv-miR-301a-3p mature miRNA
• Sequence: 55 - CAGUGCAAUAGUAUUGUCAAAGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196