miRBase entry: pbv-mir-222a

Stem-loop pbv-mir-222a


Accession
MI0030297
Description
Python bivittatus pbv-mir-222a precursor miRNA


Sequence

agcugcucaucaguCGCUCAGUAGUCAGUGUAGAUUCuguuucuucggucagcAGCUACAUCUGGCUACUGGGUCUCugaagacgucuug
....((((.((((..((((((((((((((((((...(((((.(....)..)))))))))).)))))))))))))..)))).)).))....

Structure
agcu  -  a    uC             -     AUU     -u u 
    gc uc ucag  GCUCAGUAGUCAG UGUAG   Cuguu  c u
    || || ||||  ||||||||||||| |||||   |||||  |  
    ug ag aguC  UGGGUCAUCGGUC ACAUC   GAcga  g c
guuc  c  a    UC             U     ---     cu g 


Annotation confidence Not enough data
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Genome context
KE954435.1: 197477-197566 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-222a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-222a-5p

Accession MIMAT0039033
Description Python bivittatus pbv-miR-222a-5p mature miRNA
Sequence 15 - CGCUCAGUAGUCAGUGUAGAUUC - 37
Evidence experimental
Illumina [1]

Mature pbv-miR-222a-3p

Accession MIMAT0039034
Description Python bivittatus pbv-miR-222a-3p mature miRNA
Sequence 54 - AGCUACAUCUGGCUACUGGGUCUC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196