Stem-loop pbv-mir-200b

Accession

MI0030275

Description

Python bivittatus pbv-mir-200b precursor miRNA

Sequence

ugagaaaccauucuCAUCUUACUGGGCAGCGUUGGAcguuuuaugaguuucUAAUACUGCCUGGUAAAGAUGuuaauggcgucucc
.((((..(((((..(((((((((((((((.((((((.............)))))).))))))))).))))))..)))))..)))).

Structure

u    aa     cu      -         C      cguuu 
 gaga  ccauu  CAUCUU ACUGGGCAG GUUGGA     u
 ||||  |||||  |||||| ||||||||| ||||||     a
 cucu  gguaa  GUAGAA UGGUCCGUC UAAUcu     u
c    gc     uu      A         A      uugag 

Annotation confidence Not enough data

Genome context

KE953648.1: 228883-228968 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-200b

Mature pbv-miR-200b-5p

• Accession: MIMAT0039001
• Description: Python bivittatus pbv-miR-200b-5p mature miRNA
• Sequence: 15 - CAUCUUACUGGGCAGCGUUGGA - 36
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-200b-3p

• Accession: MIMAT0039002
• Description: Python bivittatus pbv-miR-200b-3p mature miRNA
• Sequence: 52 - UAAUACUGCCUGGUAAAGAUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196