miRBase entry: pbv-mir-199-2

Stem-loop pbv-mir-199-2

Accession

MI0030272

Description

Python bivittatus pbv-mir-199-2 precursor miRNA

Sequence

ccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCAggacaaugcuguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggaacg
(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).))).....

Structure

-----   -    c   gcC       U        C   UCAg    a 
     ccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
     ||| |||| |||   ||||||| |||||||| |||    ||||  
     gga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
gcaag   a    u   aUU       C        -   --ug    c

Annotation confidence Not enough data

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Genome context

KE960262.1: 14380-14470 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-199-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-199-5p

Accession	MIMAT0038996
Description	Python bivittatus pbv-miR-199-5p mature miRNA
Sequence	14 - CCCAGUGUUCAGACUACCUGUUCA - 37
Evidence	experimental Illumina [1]

Mature pbv-miR-199-3p

Accession	MIMAT0038997
Description	Python bivittatus pbv-miR-199-3p mature miRNA
Sequence	53 - ACAGUAGUCUGCACAUUGGUU - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196