miRBase entry: pbv-mir-182

Stem-loop pbv-mir-182

Accession

MI0030259

Description

Python bivittatus pbv-mir-182 precursor miRNA

Sequence

cucucccucuugcugucUUUGGCAAUGGUAGAACUCACACUggugagauaucuggauccggUGGUUCUAGACUUGCCAACUaccgccuggggguc
....(((((..((.((..(((((((...((((((...((((((..((....))....))))))))))))...)))))))..)).))..)))))..

Structure

cucu     uu  u  cU       UGG      UCA      --ug  a 
    cccuc  gc gu  UUGGCAA   UAGAAC   CACUgg    ag u
    |||||  || ||  |||||||   ||||||   ||||||    ||  
    ggggg  cg ca  AACCGUU   AUCUUG   GUggcc    uc a
--cu     uc  c  UC       CAG      ---      uagg  u

Annotation confidence Not enough data

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Genome context

KE958924.1: 41416-41510 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-182

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-182-5p

Accession	MIMAT0038980
Description	Python bivittatus pbv-miR-182-5p mature miRNA
Sequence	18 - UUUGGCAAUGGUAGAACUCACACU - 41
Evidence	experimental Illumina [1]

Mature pbv-miR-182-3p

Accession	MIMAT0038981
Description	Python bivittatus pbv-miR-182-3p mature miRNA
Sequence	62 - UGGUUCUAGACUUGCCAACU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196