miRBase entry: pbv-mir-145

Stem-loop pbv-mir-145


Accession
MI0030243
Description
Python bivittatus pbv-mir-145 precursor miRNA


Sequence

acuauguccucgggGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagaaggGGAUUCCUGGAAAUACUGUUCUuggggucauggcuc
.(((((.((((((((..((((.((.(((((((((((((...........))))))))))))).)).)))).)))))))).)))))...

Structure
--a     u        UC    U  C             agau 
   cuaug ccucgggG  CAGU UU CCAGGAAUCCCUu    g
   ||||| ||||||||  |||| || |||||||||||||    c
   gguac gggguUCU  GUCA AA GGUCCUUAGGgga    u
cuc     u        -U    U  A             agaa 


Annotation confidence Not enough data
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Genome context
KE953037.1: 158349-158436 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-145-5p

Accession MIMAT0038959
Description Python bivittatus pbv-miR-145-5p mature miRNA
Sequence 15 - GUCCAGUUUUCCCAGGAAUCCCU - 37
Evidence experimental
Illumina [1]

Mature pbv-miR-145-3p

Accession MIMAT0038960
Description Python bivittatus pbv-miR-145-3p mature miRNA
Sequence 53 - GGAUUCCUGGAAAUACUGUUCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196