Stem-loop pbv-mir-139

Accession

MI0030239

Description

Python bivittatus pbv-mir-139 precursor miRNA

Sequence

auggccuggcuguauUCUACAGUGCAUGUGUCUCCAGCgucuguaagcagcUGGAGAUACGGCCCUGUUGGAAUaacagccagagcua
.(((((((((((((((((((((.((.((((((((((((((......)).)))))))))))))).))).)))))).)))))))).))))

Structure

a    -        -      -   U  A            -  cu 
 uggc cuggcugu auUCUA CAG GC UGUGUCUCCAGC gu  g
 |||| |||||||| |||||| ||| || |||||||||||| ||   
 aucg gaccgaca UAAGGU GUC CG GCAUAGAGGUcg cg  u
-    a        a      U   C  -            a  aa 

Annotation confidence Not enough data

Genome context

KE954243.1: 261578-261665 [-]

Mature pbv-miR-139-5p

• Accession: MIMAT0038951
• Description: Python bivittatus pbv-miR-139-5p mature miRNA
• Sequence: 16 - UCUACAGUGCAUGUGUCUCCAGC - 38
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-139-3p

• Accession: MIMAT0038952
• Description: Python bivittatus pbv-miR-139-3p mature miRNA
• Sequence: 52 - UGGAGAUACGGCCCUGUUGGAAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196