miRBase entry: pbv-mir-133c

Stem-loop pbv-mir-133c

Accession

MI0030231

Description

Python bivittatus pbv-mir-133c precursor miRNA

Sequence

uucuugugcuccuggggcugguaaaaaggaaccagaucgacuggcaacugaUUUGGUCCCCUUCAACCAGCUGGgggggcacaaac
...((((((((((..(((((((..((.((.(((((((((.........))))))))).)).))..)))))))..))))))))))..

Structure

uuc          gg       aa  a  a         acu 
   uugugcuccu  ggcuggu  aa gg accagaucg   g
   ||||||||||  |||||||  || || |||||||||   g
   aacacggggg  UCGACCA  UU CC UGGUUUagu   c
-ca          GG       AC  C  C         caa

Annotation confidence Not enough data

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Genome context

KE958846.1: 2848-2933 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-133c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-133c-3p

Accession	MIMAT0038940
Description	Python bivittatus pbv-miR-133c-3p mature miRNA
Sequence	52 - UUUGGUCCCCUUCAACCAGCUGG - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196