miRBase entry: pbv-mir-133b

Stem-loop pbv-mir-133b


Accession
MI0030230
Description
Python bivittatus pbv-mir-133b precursor miRNA


Sequence

gaagaagagcauugcucugGCUGGUCAAAAGGAACCAAGGCCgucuuuccuggaggUUUGGUCCCCUUCAACCAGCUAuagcagugcugaccuu
.(((...(((((((((.((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))).)))))))))...)))

Structure
g   aag         c        CA  A  A      G  g  uu 
 aag   agcauugcu ugGCUGGU  AA GG ACCAAG CC uc  u
 |||   ||||||||| ||||||||  || || |||||| || ||   
 uuc   ucgugacga AUCGACCA  UU CC UGGUUU gg gg  c
-   cag         u        AC  C  C      -  a  uc 


Annotation confidence Not enough data
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Genome context
KE957741.1: 77729-77822 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-133b-5p

Accession MIMAT0038938
Description Python bivittatus pbv-miR-133b-5p mature miRNA
Sequence 20 - GCUGGUCAAAAGGAACCAAGGCC - 42
Evidence experimental
Illumina [1]

Mature pbv-miR-133b-3p

Accession MIMAT0038939
Description Python bivittatus pbv-miR-133b-3p mature miRNA
Sequence 57 - UUUGGUCCCCUUCAACCAGCUA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196