Stem-loop pbv-mir-130c

Accession

MI0030225

Description

Python bivittatus pbv-mir-130c precursor miRNA

Sequence

cgcucuccuugucguccugUGCCCUUUUUCUGUUGUACUACUgggagcucucauuagCAGUGCAAUAUUAAAAGGGCAUUggcuggcagagguu
.((.(((..(((((.((.((((((((((..(((((((((.((((((....)).)))).)))))))))..)))))))))).)).)))))))))).

Structure

c  u   cu     u  u          UC         A    -  g 
 gc cuc  ugucg cc gUGCCCUUUU  UGUUGUACU CUgg ga c
 || |||  ||||| || ||||||||||  ||||||||| |||| ||  
 ug gag  acggu gg UACGGGAAAA  AUAACGUGA gauu cu u
u  -   --     c  U          UU         C    a  c 

Annotation confidence Not enough data

Genome context

KE953167.1: 486584-486677 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-130c

Mature pbv-miR-130c-5p

• Accession: MIMAT0038929
• Description: Python bivittatus pbv-miR-130c-5p mature miRNA
• Sequence: 20 - UGCCCUUUUUCUGUUGUACUACU - 42
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-130c-3p

• Accession: MIMAT0038930
• Description: Python bivittatus pbv-miR-130c-3p mature miRNA
• Sequence: 58 - CAGUGCAAUAUUAAAAGGGCAUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196