miRBase entry: pbv-mir-130b

Stem-loop pbv-mir-130b


Accession
MI0030224
Description
Python bivittatus pbv-mir-130b precursor miRNA


Sequence

gagcagucugcuacucuuuccuuguugcgcuacuguucagcuucgccucuagCAGUGCAAUAAUGAAAGGGCaucagccccucc
(((..(.(((...(((((((.((((((((((.(((....((...))...))).)))))))))).)))))))...))))..))).

Structure
-   ca u   cua       c          a   uuca  u 
 gag  g cug   cucuuuc uuguugcgcu cug    gc  
 |||  | |||   ||||||| |||||||||| |||    || u
 cuc  c gac   GGGAAAG AAUAACGUGA gau    cg  
c   cc -   uaC       U          C   -cuc  c 


Annotation confidence Not enough data
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Genome context
KE953167.1: 507018-507101 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-130b-3p

Accession MIMAT0038928
Description Python bivittatus pbv-miR-130b-3p mature miRNA
Sequence 53 - CAGUGCAAUAAUGAAAGGGC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196