miRBase entry: pbv-mir-125a

Stem-loop pbv-mir-125a


Accession
MI0030215
Description
Python bivittatus pbv-mir-125a precursor miRNA


Sequence

ggcaucuucucugUCCCUGAGACCCUUAACCUGUGAggaagcccagaggucacaggugagggccuugggaacugagugg
.....((.(((.((.((((((.((((((.(((((((((....)).....))))))))))))).)))))).)).))).))

Structure
ggcau  u   u  C      A      A       -----  a 
     cu cuc gU CCUGAG CCCUUA CCUGUGA     gg a
     || ||| || |||||| |||||| |||||||     ||  
     gg gag ca ggguuc gggagu ggacacu     cc g
-----  u   u  a      c      -       ggaga  c 


Annotation confidence Not enough data
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Genome context
KE959282.1: 18897-18975 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pbv-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-125a-5p

Accession MIMAT0038915
Description Python bivittatus pbv-miR-125a-5p mature miRNA
Sequence 14 - UCCCUGAGACCCUUAACCUGUGA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196