Stem-loop pbv-mir-106

Accession

MI0030208

Description

Python bivittatus pbv-mir-106 precursor miRNA

Sequence

ucgguggugcAAAAGUGCUUAUAGUGCAGGUAGUccagugaucucuACUGCAGUGUUAGCACUUCAguggcacaaug
...(((.(((..(((((((.(((.(((((.(((...........)))))))).))).)))))))..))).)))....

Structure

-ucg   g   AA       U   G     G   Ucca 
    gug ugc  AAGUGCU AUA UGCAG UAG    g
    ||| |||  ||||||| ||| ||||| |||    u
    cac gug  UUCACGA UGU ACGUC Auc    g
guaa   g   AC       U   G     -   ucua 

Annotation confidence Not enough data

Genome context

KE958055.1: 3743-3819 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from pbv-mir-106

Mature pbv-miR-106-5p

• Accession: MIMAT0038905
• Description: Python bivittatus pbv-miR-106-5p mature miRNA
• Sequence: 11 - AAAAGUGCUUAUAGUGCAGGUAGU - 34
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-106-3p

• Accession: MIMAT0038906
• Description: Python bivittatus pbv-miR-106-3p mature miRNA
• Sequence: 47 - ACUGCAGUGUUAGCACUUCA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196