Stem-loop sequence pbv-mir-92a-1

Accession

MI0030196 (change log)

Description

Python bivittatus miR-92a-1 stem-loop

Stem-loop

   ---u      --------            c   u       ug guu 
5'     uucuac        acagguugggau ggu gcaaugc  u   g
       ||||||        |||||||||||| ||| |||||||  |   a
3'     ggggug        uguccggcccug uca cguuaug  g   g
   gaac      guuggagu            u   -       gu ucu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Python_molurus_bivittatus-5.0.2; GCA_000186305.2): KE958468.1: 77447-77533 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pbv-mir-92a-1

• pbv-mir-17: KE958468.1: 78131-78217 [-]
• pbv-mir-18a: KE958468.1: 77990-78083 [-]
• pbv-mir-19a: KE958468.1: 77858-77941 [-]
• pbv-mir-20a: KE958468.1: 77710-77789 [-]
• pbv-mir-19b: KE958468.1: 77568-77651 [-]
• pbv-mir-92a-1: KE958468.1: 77447-77533 [-]

Database links

• miRBase Tracker:MI0030196

Mature sequence pbv-miR-92a-3p

• Accession: MIMAT0038889
• Sequence: 48 - uauugcacuugucccggccugu - 69
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).