miRBase entry: pbv-mir-34b

Stem-loop pbv-mir-34b

Accession

MI0030194

Description

Python bivittatus pbv-mir-34b precursor miRNA

Sequence

aaucauguuugguuuguAGGCAGUGUAGUUAGCUGAUUGUgugucuccccagcAAUCACUAGCUUCACUGUCAucaaaacaaugugcag
...((((((.(..(((..(((((((.((((((.(((((((.((......))))))))))))))).)))))))..)))..)))))))...

Structure

aau      u gu   uA       U      C       g  uc 
   cauguu g  uug  GGCAGUG AGUUAG UGAUUGU ug  u
   |||||| |  |||  ||||||| |||||| ||||||| ||   
   guguaa c  aac  CUGUCAC UCGAUC ACUAAcg ac  c
gac      - aa   uA       U      -       -  cc

Annotation confidence Not enough data

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Genome context

KE957210.1: 112276-112364 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-34b-5p

Accession	MIMAT0038885
Description	Python bivittatus pbv-miR-34b-5p mature miRNA
Sequence	18 - AGGCAGUGUAGUUAGCUGAUUGU - 40
Evidence	experimental Illumina [1]

Mature pbv-miR-34b-3p

Accession	MIMAT0038886
Description	Python bivittatus pbv-miR-34b-3p mature miRNA
Sequence	54 - AAUCACUAGCUUCACUGUCA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196