miRBase entry: pbv-mir-29a-2

Stem-loop pbv-mir-29a-2


Accession
MI0030180
Description
Python bivittatus pbv-mir-29a-2 precursor miRNA


Sequence

acacaggcugACCGAUUUCUCUUGGUGUUCAGagucuuaguuuuuguCUAGCACCAUUUGAAAUCGGUuaugauguagggggaaaagc
..(((...(((((((((((...(((((((.(((.............))))))))))...)))))))))))...)))............

Structure
----------ac   ggc           UCU       C   gucuu 
            aca   ugACCGAUUUC   UGGUGUU AGa     a
            |||   |||||||||||   ||||||| |||     g
            ugu   auUGGCUAAAG   ACCACGA UCu     u
cgaaaaggggga   agu           UUU       -   guuuu 


Annotation confidence Not enough data
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Genome context
KE953855.1: 172389-172476 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-29a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-29a-3p

Accession MIMAT0038866
Description Python bivittatus pbv-miR-29a-3p mature miRNA
Sequence 48 - CUAGCACCAUUUGAAAUCGGU - 68
Evidence experimental
Illumina [1]

Mature pbv-miR-29a-2-5p

Accession MIMAT0038867
Description Python bivittatus pbv-miR-29a-2-5p mature miRNA
Sequence 11 - ACCGAUUUCUCUUGGUGUUCAG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196