Stem-loop pbv-mir-27a

Accession

MI0030177

Description

Python bivittatus pbv-mir-27a precursor miRNA

Sequence

gacugccuaggguAGGGCUUAGCUCACUUGUGAACAgcguuugguucagccgugUUCACAGUGGCUAAGUUCCGCcacuuggagu
.(((.((.(((((.(((((((((.((((.(((((((..(((......)))..)))))))))))))))))))).))).)).)))))

Structure

g   g  u  -   A         U    U       gc   ug 
 acu cc ag ggu GGGCUUAGC CACU GUGAACA  guu  g
 ||| || || ||| ||||||||| |||| |||||||  |||   
 uga gg uc cCG CUUGAAUCG GUGA CACUUgu  cga  u
-   -  u  a   C         -    -       gc   cu 

Annotation confidence Not enough data

Genome context

KE953590.1: 99832-99916 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-27a

Mature pbv-miR-27a-5p

• Accession: MIMAT0038861
• Description: Python bivittatus pbv-miR-27a-5p mature miRNA
• Sequence: 14 - AGGGCUUAGCUCACUUGUGAACA - 36
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-27a-3p

• Accession: MIMAT0038862
• Description: Python bivittatus pbv-miR-27a-3p mature miRNA
• Sequence: 55 - UUCACAGUGGCUAAGUUCCGC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196