miRBase entry: pbv-mir-22

Stem-loop pbv-mir-22


Accession
MI0030169
Description
Python bivittatus pbv-mir-22 precursor miRNA


Sequence

uggcuacccagcagcAGUUCUUCAGUGGCACGCUUUAcguccccuccagcagcuaAAGCUGCCAGUUGAAGAACUGUugaccguagcugc
.((((((....(((((((((((((((((((.((((((.((...........))))))))))))).))))))))))))))...))))))..

Structure
-u      ccag              -     C      c  cccc 
  ggcuac    cagcAGUUCUUCAG UGGCA GCUUUA gu    u
  ||||||    |||||||||||||| ||||| |||||| ||    c
  ucgaug    guUGUCAAGAAGUU ACCGU CGAAau cg    c
cg      -cca              G     -      -  acga 


Annotation confidence Not enough data
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Genome context
KE957638.1: 96450-96539 [-]

Database links

Mature pbv-miR-22-5p

Accession MIMAT0038851
Description Python bivittatus pbv-miR-22-5p mature miRNA
Sequence 16 - AGUUCUUCAGUGGCACGCUUUA - 37
Evidence experimental
Illumina [1]

Mature pbv-miR-22-3p

Accession MIMAT0038852
Description Python bivittatus pbv-miR-22-3p mature miRNA
Sequence 56 - AAGCUGCCAGUUGAAGAACUGU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196