miRBase entry: pbv-mir-21

Stem-loop pbv-mir-21


Accession
MI0030168
Description
Python bivittatus pbv-mir-21 precursor miRNA


Sequence

uaccuuucugucggaUAGCUUAUCAGACUGAUGUUGACuguuggaugucauggCAACAACAGUCGGUAGGCUGUCugacauuuugguauc
((((....((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))....))))..

Structure
--    uuuc                A     A     A    ugg 
  uacc    ugucggaUAGCUUAUC GACUG UGUUG Cugu   a
  ||||    |||||||||||||||| ||||| ||||| ||||    
  augg    acaguCUGUCGGAUGG CUGAC ACAAC ggua   u
cu    uuuu                -     A     -    cug 


Annotation confidence Not enough data
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Genome context
KE953887.1: 87749-87838 [-]

Database links

Mature pbv-miR-21-5p

Accession MIMAT0038849
Description Python bivittatus pbv-miR-21-5p mature miRNA
Sequence 16 - UAGCUUAUCAGACUGAUGUUGAC - 38
Evidence experimental
Illumina [1]

Mature pbv-miR-21-3p

Accession MIMAT0038850
Description Python bivittatus pbv-miR-21-3p mature miRNA
Sequence 54 - CAACAACAGUCGGUAGGCUGUC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196