miRBase entry: pbv-mir-20a

Stem-loop pbv-mir-20a


Accession
MI0030166
Description
Python bivittatus pbv-mir-20a precursor miRNA


Sequence

ccuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuucauaaucuacugcauuaggagcacuuaaaguacuacuagcug
...((((.(((.((((((((.((((((((.(((.(((....)))))))))))))).))))))))..))).))))......

Structure
---ccu    c   -A        A        G   u   u 
      guag acU  AAGUGCUU UAGUGCAG UAG guu c
      |||| |||  |||||||| |||||||| ||| |||  
      cauc uga  uucacgag auuacguc auc uaa a
gucgau    a   aa        g        -   -   u 


Annotation confidence Not enough data
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Genome context
KE958468.1: 77710-77789 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from pbv-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-20a-5p

Accession MIMAT0038846
Description Python bivittatus pbv-miR-20a-5p mature miRNA
Sequence 11 - UAAAGUGCUUAUAGUGCAGGUAG - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196