Stem-loop pbv-mir-18a

Accession

MI0030162

Description

Python bivittatus pbv-mir-18a precursor miRNA

Sequence

auaacugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguugu
...((.(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).))

Structure

aua  u         u   --   U    C   U    A   -  aa u 
   ac gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug  g a
   || ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
   ug ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
---  u         c   CU   U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

KE958468.1: 77990-78083 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pbv-mir-18a

Mature pbv-miR-18a-5p

• Accession: MIMAT0038840
• Description: Python bivittatus pbv-miR-18a-5p mature miRNA
• Sequence: 18 - UAAGGUGCAUCUAGUGCAGAUAG - 40
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-18a-3p

• Accession: MIMAT0038841
• Description: Python bivittatus pbv-miR-18a-3p mature miRNA
• Sequence: 59 - ACUGCCCUAAGUGCUCCUUCUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196