Stem-loop sequence pbv-mir-17

Accession

MI0030161 (change log)

Description

Python bivittatus miR-17 stem-loop

Stem-loop

   u     a       -ca        a  g     g   u a  u 
5'  guuag auaaugu   aagugcuu ca ugcag uag g uu a
    ||||| |||||||   |||||||| || ||||| ||| | ||  
3'  cgguc uauuacg   uucacgga gu acguc auc c ag u
   a     g       aug        a  g     -   - a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Python_molurus_bivittatus-5.0.2; GCA_000186305.2): KE958468.1: 78131-78217 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pbv-mir-17

• pbv-mir-17: KE958468.1: 78131-78217 [-]
• pbv-mir-18a: KE958468.1: 77990-78083 [-]
• pbv-mir-19a: KE958468.1: 77858-77941 [-]
• pbv-mir-20a: KE958468.1: 77710-77789 [-]
• pbv-mir-19b: KE958468.1: 77568-77651 [-]
• pbv-mir-92a-1: KE958468.1: 77447-77533 [-]

Database links

• miRBase Tracker:MI0030161

Mature sequence pbv-miR-17-5p

• Accession: MIMAT0038838
• Sequence: 15 - caaagugcuuacagugcaggua - 36
• Evidence: experimental; Illumina [1]

Mature sequence pbv-miR-17-3p

• Accession: MIMAT0038839
• Sequence: 53 - acugcagugaaggcacuuguagc - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).