miRBase entry: pbv-mir-15a

Stem-loop pbv-mir-15a


Accession
MI0030156
Description
Python bivittatus pbv-mir-15a precursor miRNA


Sequence

ccucaaaguacuaUAGCAGCACAUCAUGAUUUGUGuuucauaauaaauaugCAAGUCAUUAUUUGCUGCUUUAgaauuuuaagg
(((.(((((.(((.(((((((.((.(((((((((((............))))))))))).)).))))))).))).))))).)))

Structure
   c     a   U       C  C           uucau 
ccu aaagu cua AGCAGCA AU AUGAUUUGUGu     a
||| ||||| ||| ||||||| || |||||||||||      
gga uuuua gAU UCGUCGU UA UACUGAACgua     a
   a     a   U       U  U           uaaau 


Annotation confidence Not enough data
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Genome context
KE954284.1: 233014-233097 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-15a-5p

Accession MIMAT0038829
Description Python bivittatus pbv-miR-15a-5p mature miRNA
Sequence 14 - UAGCAGCACAUCAUGAUUUGUG - 35
Evidence experimental
Illumina [1]

Mature pbv-miR-15a-3p

Accession MIMAT0038830
Description Python bivittatus pbv-miR-15a-3p mature miRNA
Sequence 52 - CAAGUCAUUAUUUGCUGCUUUA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196