miRBase entry: pbv-let-7f-2

Stem-loop pbv-let-7f-2


Accession
MI0030140
Description
Python bivittatus pbv-let-7f-2 precursor miRNA


Sequence

uuaucagguUGAGGUAGUAGAUUGUAUAGUUguagggcaguuauuuugcccucuucaggagauaaCUAUACAAUCUAUUGCCUUCCcugagga
...(((((..((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))...

Structure
uua     uU                       ---------       u 
   ucagg  GAGGUAGUAGAUUGUAUAGUUgu         agggcag u
   |||||  |||||||||||||||||||||||         ||||||| a
   agucC  UUCCGUUAUCUAACAUAUCaaua         ucccguu u
agg     -C                       gaggacuuc       u 


Annotation confidence Not enough data
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Genome context
KE953102.1: 568370-568462 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pbv-let-7f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-let-7f-5p

Accession MIMAT0038805
Description Python bivittatus pbv-let-7f-5p mature miRNA
Sequence 10 - UGAGGUAGUAGAUUGUAUAGUU - 31
Evidence experimental
Illumina [1]

Mature pbv-let-7f-2-3p

Accession MIMAT0038807
Description Python bivittatus pbv-let-7f-2-3p mature miRNA
Sequence 66 - CUAUACAAUCUAUUGCCUUCC - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196