miRBase entry: pbv-let-7f-1

Stem-loop pbv-let-7f-1

Accession

MI0030139

Description

Python bivittatus pbv-let-7f-1 precursor miRNA

Sequence

ccugggaUGAGGUAGUAGAUUGUAUAGUUuuagggucauacccggucuuggagauaaCUAUACAAUCUACUGUCUUUCCua
..(((((.(((((((((((((((((((((...((((...)))).((((...))))))))))))))))))))))))))))))

Structure

cc     U                     ---------uua    c 
  uggga GAGGUAGUAGAUUGUAUAGUU            gggu  
  ||||| |||||||||||||||||||||            |||| a
  auCCU UUCUGUCAUCUAACAUAUCaa            ccca  
--     -                     uagagguucugg    u

Annotation confidence Not enough data

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Genome context

KE954158.1: 74212-74292 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-let-7f-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-let-7f-5p

Accession	MIMAT0038805
Description	Python bivittatus pbv-let-7f-5p mature miRNA
Sequence	8 - UGAGGUAGUAGAUUGUAUAGUU - 29
Evidence	experimental Illumina [1]

Mature pbv-let-7f-3p

Accession	MIMAT0038806
Description	Python bivittatus pbv-let-7f-3p mature miRNA
Sequence	58 - CUAUACAAUCUACUGUCUUUCC - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196