miRBase entry: pbv-let-7b

Stem-loop pbv-let-7b


Accession
MI0030133
Description
Python bivittatus pbv-let-7b precursor miRNA


Sequence

ggUGAGGUAGUAGGUUGUGUGGUUucaggguaguaauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCUuga
((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))....

Structure
----  U                     ---------uca      u 
    gg GAGGUAGUAGGUUGUGUGGUU            ggguag a
    || |||||||||||||||||||||            |||||| a
    CC UUCCGUCAUCCAACAUAUCaa            cccguu u
aguU  -                     uagaggacuaac      u 


Annotation confidence Not enough data
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Genome context
KE953602.1: 72604-72686 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-let-7b-5p

Accession MIMAT0038796
Description Python bivittatus pbv-let-7b-5p mature miRNA
Sequence 3 - UGAGGUAGUAGGUUGUGUGGUU - 24
Evidence experimental
Illumina [1]

Mature pbv-let-7b-3p

Accession MIMAT0038797
Description Python bivittatus pbv-let-7b-3p mature miRNA
Sequence 59 - CUAUACAACCUACUGCCUUCCU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196