miRBase entry: cli-mir-9642

Stem-loop cli-mir-9642


Accession
MI0030122
Description
Columba livia cli-mir-9642 precursor miRNA


Sequence

cgaccagagGUGAGAGCUCAGGUGCCUUCUCcaaauccuucugagcacggGACGGCGCCCUGACCUCUGUCCccucucggcag
...(((((((..((((.(((((((((.((((....((.....))....)))).)))).))))).))))....))))).))...

Structure
cga  -     --UG    C     -    U    caaa  c 
   cc agagG    AGAG UCAGG UGCC UCUC    uc u
   || |||||    |||| ||||| |||| ||||    || u
   gg ucucc    UCUC AGUCC GCGG AGgg    ag c
gac  c     CCUG    C     C    C    cacg  u 


Annotation confidence Not enough data
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Genome context
KB376336.1: 218899-218981 [-]

Database links

Mature cli-miR-9642-5p

Accession MIMAT0038777
Description Columba livia cli-miR-9642-5p mature miRNA
Sequence 10 - GUGAGAGCUCAGGUGCCUUCUC - 31
Evidence experimental
Illumina [1]

Mature cli-miR-9642-3p

Accession MIMAT0038778
Description Columba livia cli-miR-9642-3p mature miRNA
Sequence 51 - GACGGCGCCCUGACCUCUGUCC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196