miRBase entry: cli-mir-2970

Stem-loop cli-mir-2970

Accession

MI0030088

Description

Columba livia cli-mir-2970 precursor miRNA

Sequence

acagcuccugcccugcgGACAGUCAGCAGUUGGUCUGGUgugagcagcgauucuCAGAUCACCUCUUGGCUGUGGGuggugcagggagcacccc
...((((((((.((((..((((((((.((.((((((((.((........)).).))))))).)).))))))))..)))).))).))))).....

Structure

--aca     -   c    gG        C  U       - U  gag 
     gcucc ugc cugc  ACAGUCAG AG UGGUCUG G gu   c
     ||||| ||| ||||  |||||||| || ||||||| | ||    
     cgagg acg gguG  UGUCGGUU UC ACUAGAC c ua   a
cccca     g   u    GG        C  C       u u  gcg

Annotation confidence Not enough data

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Genome context

KB375561.1: 2757526-2757619 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-2970

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-2970-5p

Accession	MIMAT0038713
Description	Columba livia cli-miR-2970-5p mature miRNA
Sequence	18 - GACAGUCAGCAGUUGGUCUGGU - 39
Evidence	experimental Illumina [1]

Mature cli-miR-2970-3p

Accession	MIMAT0038714
Description	Columba livia cli-miR-2970-3p mature miRNA
Sequence	55 - CAGAUCACCUCUUGGCUGUGGG - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196