miRBase entry: cli-mir-2954

Stem-loop cli-mir-2954


Accession
MI0030087
Description
Columba livia cli-mir-2954 precursor miRNA


Sequence

ugucugggcuuggagcagUGCUGAGAGGGCUUGGGGAGAGGAuuguaguggagcucCAUCCCCAUUCCACUCCUAGCAGCucucuggccacccac
......((((.(((((..(((((.(((((..((((((..(((..((......))))).))))))..)).))).))))))))))..))))......

Structure
ugucug    -u     ag     A   -  CU      GA   uu  ag 
      ggcu  ggagc  UGCUG GAG GG  UGGGGA  GGA  gu  u
      ||||  |||||  ||||| ||| ||  ||||||  |||  ||   
      ccgg  ucuCG  ACGAU CUC CC  ACCCCU  Ccu  cg  g
caccca    uc     --     C   A  UU      -A   --  ag 


Annotation confidence Not enough data
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Genome context
KB375742.1: 14798-14892 [+]

Database links

Mature cli-miR-2954-5p

Accession MIMAT0038711
Description Columba livia cli-miR-2954-5p mature miRNA
Sequence 19 - UGCUGAGAGGGCUUGGGGAGAGGA - 42
Evidence experimental
Illumina [1]

Mature cli-miR-2954-3p

Accession MIMAT0038712
Description Columba livia cli-miR-2954-3p mature miRNA
Sequence 57 - CAUCCCCAUUCCACUCCUAGCAGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196