miRBase entry: cli-mir-1720

Stem-loop cli-mir-1720

Accession

MI0030075

Description

Columba livia cli-mir-1720 precursor miRNA

Sequence

cugcacuucUGACCACCUCAGCCGUUGCUUUUGugagccucgagagcGAAGCAACGAGAGGCUGGUCUGAaacccccuc
......(((.(((((((((...(((((((((.((...........))))))))))).)))).))))).)))........

Structure

--cugcac   U     -    AGC         U  gagc 
        uuc GACCA CCUC   CGUUGCUUU Gu    c
        ||| ||||| ||||   ||||||||| ||    u
        aAG CUGGU GGAG   GCAACGAAG cg    c
cuccccca   U     C    --A         -  agag

Annotation confidence Not enough data

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Genome context

KB375424.1: 999045-999123 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1720

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-1720-5p

Accession	MIMAT0038693
Description	Columba livia cli-miR-1720-5p mature miRNA
Sequence	10 - UGACCACCUCAGCCGUUGCUUUUG - 33
Evidence	experimental Illumina [1]

Mature cli-miR-1720-3p

Accession	MIMAT0038694
Description	Columba livia cli-miR-1720-3p mature miRNA
Sequence	48 - GAAGCAACGAGAGGCUGGUCUGA - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196