miRBase entry: cli-mir-454

Stem-loop cli-mir-454


Accession
MI0030047
Description
Columba livia cli-mir-454 precursor miRNA


Sequence

uaaggaugagACCCUAUCAAUAUUGCCUCUGCUuuugugaucaggguagUAGUGCAAUAUUGCUUAUAGGGUCUuuucuuuugaggguu
.(((((.((((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))))).)))))........

Structure
-------u     u          ---         -  -       u u 
        aagga gagACCCUAU   CAAUAUUGC CU CUGCUuu g g
        ||||| ||||||||||   ||||||||| || ||||||| |  
        uuucu uUCUGGGAUA   GUUAUAACG GA gauggga c a
uugggagu     u          UUC         U  U       - u 


Annotation confidence Not enough data
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Genome context
KB376592.1: 497716-497804 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-454-5p

Accession MIMAT0038644
Description Columba livia cli-miR-454-5p mature miRNA
Sequence 11 - ACCCUAUCAAUAUUGCCUCUGCU - 33
Evidence experimental
Illumina [1]

Mature cli-miR-454-3p

Accession MIMAT0038645
Description Columba livia cli-miR-454-3p mature miRNA
Sequence 50 - UAGUGCAAUAUUGCUUAUAGGGUCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196