miRBase entry: cli-mir-449c

Stem-loop cli-mir-449c

Accession

MI0030044

Description

Columba livia cli-mir-449c precursor miRNA

Sequence

agaauguaacagucUGGCAGUGCAUGUUAGCUGGCUGUUgugucugaugugucaaCAGCUGCUAGCUGUGCUCCACauuguuucauucaaa
.(((((.((((((.(((.((((((.((((((.((((((((...(....)...))))))))))))))))))))))).)))))).)))))...

Structure

--a     u      c   C      U      U        ugu u 
   gaaug aacagu UGG AGUGCA GUUAGC GGCUGUUg   c g
   ||||| |||||| ||| |||||| |||||| ||||||||   |  
   cuuac uuguua ACC UCGUGU CGAUCG UCGACaac   g a
aaa     u      C   -      -      -        ugu u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KB375359.1: 2804268-2804358 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cli-mir-449c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-449c-5p

Accession	MIMAT0038639
Description	Columba livia cli-miR-449c-5p mature miRNA
Sequence	15 - UGGCAGUGCAUGUUAGCUGGCUGUU - 39
Evidence	experimental Illumina [1]

Mature cli-miR-449c-3p

Accession	MIMAT0038640
Description	Columba livia cli-miR-449c-3p mature miRNA
Sequence	56 - CAGCUGCUAGCUGUGCUCCAC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196