miRBase entry: cli-mir-429

Stem-loop cli-mir-429


Accession
MI0030041
Description
Columba livia cli-mir-429 precursor miRNA


Sequence

aagugccugcugauugcuGUCUUACCAGGCAAAGUUAGAUcuagcuauuuuugucUAAUACUGUCUGGUAAUGCCGUcaaucgcaucggcaaaa
...(((((((.((((((.((.((((((((((..(((((((............)))))))..)))))))))).)).).))))))))..))))...

Structure
aag    --   u     - u  C          AA       cuagc 
   ugcc  ugc gauug c GU UUACCAGGCA  GUUAGAU     u
   ||||  ||| ||||| | || ||||||||||  |||||||      
   acgg  acg cuaac G CG AAUGGUCUGU  UAAUcug     a
aaa    cu   -     U C  U          CA       uuuuu 


Annotation confidence Not enough data
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Genome context
KB376210.1: 2382074-2382167 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-429-5p

Accession MIMAT0038634
Description Columba livia cli-miR-429-5p mature miRNA
Sequence 19 - GUCUUACCAGGCAAAGUUAGAU - 40
Evidence experimental
Illumina [1]

Mature cli-miR-429-3p

Accession MIMAT0038635
Description Columba livia cli-miR-429-3p mature miRNA
Sequence 56 - UAAUACUGUCUGGUAAUGCCGU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196