miRBase entry: cli-mir-301b

Stem-loop cli-mir-301b

Accession

MI0030027

Description

Columba livia cli-mir-301b precursor miRNA

Sequence

gcugguaucgcuggcUCUGACAAUGUUGCACUACUgucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCauuugguuccaguccu
(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).)))))...

Structure

---     u    cug   C         ---      A  gucugc 
   gcugg aucg   gcU UGACAAUGU   UGCACU CU      a
   ||||| ||||   ||| |||||||||   |||||| ||       
   ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
ucc     u    uua   A         AUA      C  aauaaa

Annotation confidence Not enough data

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Genome context

KB376592.1: 504205-504294 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-301b-5p

Accession	MIMAT0038613
Description	Columba livia cli-miR-301b-5p mature miRNA
Sequence	16 - UCUGACAAUGUUGCACUACU - 35
Evidence	experimental Illumina [1]

Mature cli-miR-301b-3p

Accession	MIMAT0038614
Description	Columba livia cli-miR-301b-3p mature miRNA
Sequence	52 - CAGUGCAAUAAUAUUGUCAAAGC - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196