miRBase entry: cli-mir-301a

Stem-loop cli-mir-301a


Accession
MI0030026
Description
Columba livia cli-mir-301a precursor miRNA


Sequence

cugcuaacgaacGCUCUGACUUUAUUGCACUACUguacuucccagcuagCAGUGCAAUAGUAUUGUCAAAGCAUccgaaagcag
(((((..((...(((.((((.((((((((((.((((........)).)).))))))))))....)))).)))...))..)))))

Structure
     aa  aac   C    ---U          A  -  acu 
cugcu  cg   GCU UGAC    UUAUUGCACU CU gu   u
|||||  ||   ||| ||||    |||||||||| || ||    
gacga  gc   CGA ACUG    GAUAACGUGA ga cg   c
     aa  cUA   A    UUAU          C  u  acc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB375855.1: 631245-631328 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-301a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-301a-5p

Accession MIMAT0038611
Description Columba livia cli-miR-301a-5p mature miRNA
Sequence 13 - GCUCUGACUUUAUUGCACUACU - 34
Evidence experimental
Illumina [1]

Mature cli-miR-301a-3p

Accession MIMAT0038612
Description Columba livia cli-miR-301a-3p mature miRNA
Sequence 50 - CAGUGCAAUAGUAUUGUCAAAGCAU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196