miRBase entry: cli-mir-221

Stem-loop cli-mir-221

Accession

MI0030022

Description

Columba livia cli-mir-221 precursor miRNA

Sequence

uggggcaugaACCUGGCAUACAAUGUAGAUUUcuguguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUccagc
(((.....((((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))))))..

Structure

--   ggcau          U         AUUU    -    g 
  ugg     gaACCUGGCA ACAAUGUAG    cugu guuu  
  |||     |||||||||| |||||||||    |||| |||| u
  acc     UUUGGGUCGU UGUUACAUC    GAca cgaa  
cg   -----          C         ----    a    u

Annotation confidence Not enough data

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Genome context

KB375371.1: 1295710-1295786 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-221-5p

Accession	MIMAT0038604
Description	Columba livia cli-miR-221-5p mature miRNA
Sequence	11 - ACCUGGCAUACAAUGUAGAUUU - 32
Evidence	experimental Illumina [1]

Mature cli-miR-221-3p

Accession	MIMAT0038605
Description	Columba livia cli-miR-221-3p mature miRNA
Sequence	51 - AGCUACAUUGUCUGCUGGGUUU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196