miRBase entry: cli-mir-216a

Stem-loop cli-mir-216a

Accession

MI0030017

Description

Columba livia cli-mir-216a precursor miRNA

Sequence

acggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGAgccgcuaauaacucucuCACAGUGGUAUCUGGGAUUAUGcuaaacacagcgau
...((((((..(((((.(((((((((.((.((.(((((((..............))))))))).)).))))))))).))))).))))))...

Structure

acg      aa     u         C  G  A       ccgcua 
   gcugug  uuggc UAAUCUCAG UG CA CUGUGAg      a
   ||||||  ||||| ||||||||| || || |||||||       
   cgacac  aaucG AUUAGGGUC AU GU GACACuc      u
uag      -a     U         U  G  -       ucucaa

Annotation confidence Not enough data

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Genome context

KB375999.1: 130764-130855 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-216a-5p

Accession	MIMAT0038596
Description	Columba livia cli-miR-216a-5p mature miRNA
Sequence	18 - UAAUCUCAGCUGGCAACUGUGA - 39
Evidence	experimental Illumina [1]

Mature cli-miR-216a-3p

Accession	MIMAT0038597
Description	Columba livia cli-miR-216a-3p mature miRNA
Sequence	57 - CACAGUGGUAUCUGGGAUUAUG - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196