miRBase entry: cli-mir-200a

Stem-loop cli-mir-200a

Accession

MI0030005

Description

Columba livia cli-mir-200a precursor miRNA

Sequence

ccaugguccucugugggCAUCUUACUAGACAGUGCUGGAuuuuuuggaucuacucUAACACUGUCUGGUAACGAUGUUuaaagggugaaccaaac
...(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).))))...

Structure

cca    - -    g        -             C    uuuuuu 
   uggu c cucu ugggCAUC UUACUAGACAGUG UGGA      g
   |||| | |||| |||||||| ||||||||||||| ||||       
   acca g ggga auUUGUAG AAUGGUCUGUCAC AUcu      g
caa    a u    a        C             A    caucua

Annotation confidence Not enough data

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Genome context

KB376210.1: 2379399-2379493 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-200a-5p

Accession	MIMAT0038575
Description	Columba livia cli-miR-200a-5p mature miRNA
Sequence	18 - CAUCUUACUAGACAGUGCUGGA - 39
Evidence	experimental Illumina [1]

Mature cli-miR-200a-3p

Accession	MIMAT0038576
Description	Columba livia cli-miR-200a-3p mature miRNA
Sequence	56 - UAACACUGUCUGGUAACGAUGUU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196