miRBase entry: cli-mir-199-1

Stem-loop cli-mir-199-1


Accession
MI0030003
Description
Columba livia cli-mir-199-1 precursor miRNA


Sequence

agauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugcuguugUACAGUAGUCUGCACAUUGGUUAgacugggcaagggaaa
....(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).)))....

Structure
agau   -    c   gcC       U        C   UCag    a 
    ccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
    ||| |||| |||   ||||||| |||||||| |||    ||||  
    gga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
aaag   a    u   AUU       C        -   --Ug    c 


Annotation confidence Not enough data
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Genome context
KB375307.1: 10450260-10450353 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-199-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-199-5p

Accession MIMAT0038573
Description Columba livia cli-miR-199-5p mature miRNA
Sequence 18 - CCCAGUGUUCAGACUACCUGUUC - 40
Evidence experimental
Illumina [1]

Mature cli-miR-199-3p

Accession MIMAT0038574
Description Columba livia cli-miR-199-3p mature miRNA
Sequence 56 - UACAGUAGUCUGCACAUUGGUUA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196