miRBase entry: cli-mir-181a-1

Stem-loop cli-mir-181a-1

Accession

MI0029989

Description

Columba livia cli-mir-181a-1 precursor miRNA

Sequence

uguagugguugcuucagugAACAUUCAACGCUGUCGGUGAGUUuggaauuaaagugaaaACCAUCGACCGUUGAUUGUACCcuccagcuaaccauccucc
....(((((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).)))))).....

Structure

-ugua      -   uc  u A   U      CU       A    ggaau 
     gugguu gcu  ag g ACA UCAACG  GUCGGUG GUUu     u
     |||||| |||  || | ||| ||||||  ||||||| ||||     a
     uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
ccucc      u   cc  C A   U      --       -    aguga

Annotation confidence Not enough data

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Genome context

KB375307.1: 7344736-7344835 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-181a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-181a-5p

Accession	MIMAT0038550
Description	Columba livia cli-miR-181a-5p mature miRNA
Sequence	20 - AACAUUCAACGCUGUCGGUGAGUU - 43
Evidence	experimental Illumina [1]

Mature cli-miR-181a-3p

Accession	MIMAT0038551
Description	Columba livia cli-miR-181a-3p mature miRNA
Sequence	60 - ACCAUCGACCGUUGAUUGUACC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196