miRBase entry: cli-mir-143

Stem-loop cli-mir-143

Accession

MI0029978

Description

Columba livia cli-mir-143 precursor miRNA

Sequence

augucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaauugggagucUGAGAUGAAGCACUGUAGCUCgggaagggaggaacugc
...((((((..(((.((.(((((((((.((((((.((((......)).)).)))))).))))))))).)).)))..))))))......

Structure

---aug      ag   a  G         G      U  -  aa 
      ucuccc  ccc aG UGCAGUGCU CAUCUC GG uc  u
      ||||||  ||| || ||||||||| |||||| || ||   
      ggaggg  ggg UC AUGUCACGA GUAGAG cu ag  u
cgucaa      aa   C  G         A      U  g  gg

Annotation confidence Not enough data

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Genome context

KB375668.1: 918242-918329 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-143

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-143-5p

Accession	MIMAT0038531
Description	Columba livia cli-miR-143-5p mature miRNA
Sequence	17 - GGUGCAGUGCUGCAUCUCUGG - 37
Evidence	experimental Illumina [1]

Mature cli-miR-143-3p

Accession	MIMAT0038532
Description	Columba livia cli-miR-143-3p mature miRNA
Sequence	51 - UGAGAUGAAGCACUGUAGCUC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196