miRBase entry: cli-mir-133c

Stem-loop cli-mir-133c

Accession

MI0029967

Description

Columba livia cli-mir-133c precursor miRNA

Sequence

auggugcgucccuggggcugguaaaaaggaaccagaucaacuugcaacuggaUUUGGUCCCCUUCAACCAGCUGCagcggcgcaugug
...(((((((.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)))))))...

Structure

aug       c   g       aa  a  a        aacuu 
   gugcguc cug ggcuggu  aa gg accagauc     g
   ||||||| ||| |||||||  || || ||||||||      
   uacgcgg gaC UCGACCA  UU CC UGGUUUag     c
gug       c   G       AC  C  C        gucaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KB375684.1: 950877-950964 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-133c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-133c-3p

Accession	MIMAT0038513
Description	Columba livia cli-miR-133c-3p mature miRNA
Sequence	53 - UUUGGUCCCCUUCAACCAGCUGC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196