miRBase entry: cli-mir-130a

Stem-loop cli-mir-130a


Accession
MI0029962
Description
Columba livia cli-mir-130a precursor miRNA


Sequence

cuguccaguGCCCUUUUUAUGUUGUACUACUggugaucaugcacaaaaagCAGUGCAAUGUUAAAAGGGCAUuggccagcaa
(((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).)))...

Structure
---   u             U          A  ---g   au 
   cug ccaguGCCCUUUU AUGUUGUACU CU    gug  c
   ||| ||||||||||||| |||||||||| ||    |||   
   gac gguUACGGGAAAA UGUAACGUGA ga    cac  a
aac   c             U          C  aaaa   gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB375855.1: 630666-630747 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-130a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-130a-5p

Accession MIMAT0038505
Description Columba livia cli-miR-130a-5p mature miRNA
Sequence 10 - GCCCUUUUUAUGUUGUACUACU - 31
Evidence experimental
Illumina [1]

Mature cli-miR-130a-3p

Accession MIMAT0038506
Description Columba livia cli-miR-130a-3p mature miRNA
Sequence 51 - CAGUGCAAUGUUAAAAGGGCAU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196