miRBase entry: cli-mir-100-1

Stem-loop cli-mir-100-1


Accession
MI0029946
Description
Columba livia cli-mir-100-1 precursor miRNA


Sequence

gcgccuguugccacaAACCCGUAGAUCCGAACUUGUGgucauauuccacaCAAGCUUGUAUCUAUAGGUAUGugucugucuggcaagugc
((((.((((((((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).))))...))..)))).))))

Structure
    c    --  ---    A   C      C   A      guca 
gcgc uguu  gc   caca ACC GUAGAU CGA CUUGUG    u
|||| ||||  ||   |||| ||| |||||| ||| ||||||    a
cgug acgg  ug   guGU UGG UAUCUA GUU GAACac    u
    a    uc  ucu    A   A      U   C      accu 


Annotation confidence Not enough data
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Genome context
KB375651.1: 869665-869754 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-100-5p

Accession MIMAT0038480
Description Columba livia cli-miR-100-5p mature miRNA
Sequence 16 - AACCCGUAGAUCCGAACUUGUG - 37
Evidence experimental
Illumina [1]

Mature cli-miR-100-3p

Accession MIMAT0038481
Description Columba livia cli-miR-100-3p mature miRNA
Sequence 51 - CAAGCUUGUAUCUAUAGGUAUG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196