miRBase entry: cli-mir-34c

Stem-loop cli-mir-34c


Accession
MI0029941
Description
Columba livia cli-mir-34c precursor miRNA


Sequence

aucagccuaguuacuAGGCAGUGUAGUUAGCUGAUUGCcaaaaguaccAAUCACUAGCCACACAGCCAGGuaaaaaggcuugg
...(((((..(((((.(((.((((.(((((.((((((..........))))))))))).)))).))).)))))..)))))...

Structure
auc     ag     A   A    A     C      Ccaa 
   agccu  uuacu GGC GUGU GUUAG UGAUUG    a
   |||||  ||||| ||| |||| ||||| ||||||     
   ucgga  aauGG CCG CACA CGAUC ACUAAc    a
ggu     aa     A   A    C     -      caug 


Annotation confidence Not enough data
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Genome context
KB375352.1: 2053395-2053477 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-34c-5p

Accession MIMAT0038471
Description Columba livia cli-miR-34c-5p mature miRNA
Sequence 16 - AGGCAGUGUAGUUAGCUGAUUGC - 38
Evidence experimental
Illumina [1]

Mature cli-miR-34c-3p

Accession MIMAT0038472
Description Columba livia cli-miR-34c-3p mature miRNA
Sequence 49 - AAUCACUAGCCACACAGCCAGG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196