miRBase entry: cli-mir-34b

Stem-loop cli-mir-34b

Accession

MI0029940

Description

Columba livia cli-mir-34b precursor miRNA

Sequence

gugcuugguuuguAGGCAGUGUAGUUAGCUGAUUGUaaccacugcuccgcAAUCACUACACUCACUGCCAUCaaaacaaggcacagg
((((((.((((...(((((((.((((((.(((((((............)))))))))).))))))))))....)))).))))))...

Structure

---      g    -guA       U   -   C       aacca 
   gugcuu guuu    GGCAGUG AGU UAG UGAUUGU     c
   |||||| ||||    ||||||| ||| ||| |||||||      
   cacgga caaa    CCGUCAC UCA AUC ACUAAcg     u
gga      a    aCUA       -   C   -       ccucg

Annotation confidence Not enough data

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Genome context

KB375352.1: 2053022-2053108 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-34b-5p

Accession	MIMAT0038469
Description	Columba livia cli-miR-34b-5p mature miRNA
Sequence	14 - AGGCAGUGUAGUUAGCUGAUUGU - 36
Evidence	experimental Illumina [1]

Mature cli-miR-34b-3p

Accession	MIMAT0038470
Description	Columba livia cli-miR-34b-3p mature miRNA
Sequence	51 - AAUCACUACACUCACUGCCAUC - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196